cRT-PCR Assay Name | Primer Names | Sequence 5' to 3' and Nucleotide Location (nt) | Genbank Accession Number | Reference |
---|---|---|---|---|
ERAV 5′UTR | ERAV 5′UTR F | TCAGCCCCCTGTCATTGACT (341-360) | NC_003982 | This study |
ERAV 5′UTR R | TGRaTCAGGGCTGTAACCA (769-786) | |||
ERAV Poly | ERAV Poly F | TGGATGAAGTGGTTTTTGC (6384-6402) | ||
ERAV Poly R | CAGTCAAAGCCTGGTTGTCA (6502-6521) | |||
ERAV Poly2 | ERAV Poly F | TGGATGAAGTGGTTTTTGC (6384-6402) | ||
ERAV Poly R2 | ACTCTCATTGCATCAGCTGC (6977-6996) | |||
ERBV 5′ UTR | ERBV 5′UTR F | TTTCGTTCCWbCTTTAGCRaGG (349-368) | NC_003983 | |
ERBV 5′UTR R | TCAGATCCGCACTCTATGAAG (764-784) | |||
ERBV OUTER1 | ERBV OUTER F | TTTTGATGCTTCACATTCTCC (7986-8006) | [27] | |
ERBV OUTER R | CGCTGTACCCTCGGTCCTACTC (8746-8767) | |||
ERBV OUTER2 | ERBV OUTER F | TTTTGATGCTTCACATTCTCC (7986-8006) | ||
ERBV INNER R | GCCTCGGCGAGTGAAGAG (8721-8739) | |||
ERBV INNER1 | ERBV INNER F | CTTACTAYcGAATGTGARGGGGC (8117-8138) | ||
ERBV INNER R | GCCTCGGCGAGTGAAGAG (8721-8739) | |||
ERBV INNER2 | ERBV INNER F | CTTACTAYGAATGTGARGGGGC (8117-8138) | ||
ERBV OUTER R | CGCTGTACCCTCGGTCCTACTC (8746-8767) | |||
ERBV Poly1 | ERBV Poly F | TTGAGTTGACCCTTCTGCA (7409-7427) | This study | |
ERBV Poly R | TCATACTCTGAAATGRaKdTCCATTG (7530-7553) | |||
ERBV Poly2 | ERBV Poly F | TTGAGTTGACCCTTCTGCA (7409-7427) | ||
ERBV Poly R2 | GCTGAACCAATGCCTAATCC (7879-7898) |