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Table 1 Sequence similarity values for a 711 bp portion of the rpoB gene from 12 veterinary isolates clustering within the clade containing M. avium subsp. paratuberculosis, M. avium subsp. avium, M. avium subsp. hominissuis, and M. avium subsp. silvaticum

From: Identification of Mycobacterium spp. of veterinary importance using rpoB gene sequencing

MAC species

Sequence similarity (%)

 

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

1. pig 10-5763

 

99.4

100

100

100

99.7

99.7

100

100

99.3

100

99.4

99.6

99.6

99.4

99.6

2. cow 10-7710

  

99.4

99.4

99.4

99.7

99.7

99.4

99.4

99.9

99.4

100

99.6

99.6

99.4

99.7

3. pig 10-5560

   

100

100

99.7

99.7

100

100

99.3

100

99.4

99.6

99.6

99.4

99.6

4. pig 10-5561

    

100

99.7

99.7

100

100

99.3

100

99.4

99.6

99.6

99.4

99.6

5. elk 09-8107

     

99.7

99.7

100

100

99.3

100

99.4

99.6

99.6

99.4

99.6

6. cow 09-4418

      

100

99.7

99.7

99.6

99.7

99.7

99.9

99.9

99.7

99.9

7. pig 09-4995

       

99.7

99.7

99.6

99.7

99.7

99.9

99.9

99.7

99.9

8. cow 10-1377

        

100

99.3

100

99.4

99.6

99.6

99.4

99.6

9. cow 09-4604

         

99.3

100

99.4

99.6

99.6

99.4

99.6

10. deer 09-7368

          

99.3

99.9

99.4

99.4

99.3

99.6

11. cat 10-1301

           

99.4

99.6

99.6

99.4

99.6

12. cow 10-0824

            

99.6

99.6

99.4

99.7

13. M. a. a.

             

99.7

99.9

99.7

14. M. a. p.

              

99.6

99.7

15. M. a. s.

               

99.6

16. M. a. h.

                
  1. M.a.a: M. avium subsp. avium; M.a.p.: M. avium subsp. paratuberculosis; M.a.s.: M. avium subsp. silvaticum; M.a.h.: M. avium subsp. hominissuis. Note that the sequence for M. avium subsp. silvaticum used in this analysis is Genbank Accession EF521905