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Table 1 Primers for RT-qPCR candidate genes were designed using Primer3 software [44] and based on bovine sequences obtained from the NCBI database.

From: Examination of the bovine leukocyte environment using immunogenetic biomarkers to assess immunocompetence following exposure to weaning stress

Gene

 

Sequence 5' → 3'

Amplicon Size

NCBI Accession

IL1β

F:

CAGTGCCTACGCACATGTCT

167 bp

NM_174093

 

R:

CCAGGGATTTTTGCTCTCTG

  

IL2

F:

GTGAAGTCATTGCTGCTGGA

101 bp

NM_180997

 

R:

GGCGCGTAAAAGTCAAATGT

  

IL4

F:

CTGCCCCAAAGAACACAACT

165 bp

EU276069

 

R:

TCGTCTTGGCTTCATTCACA

  

IL8

F:

TGGGCCACACTGTGAAAATTC

92 bp

[16]

 

R:

CCTTCTGCACCCACTTTTCC

  

IFNγ

F:

TTCAGAGCCAAATTGTCTCC

205 bp

[89]

 

R:

AGTTCATTTATGGCTTTGCGC

  

TNFα

F:

TGGAGGGAGAAGGGATTCTT

140 bp

AF011926

 

R:

CCAGGAACTCGCTGAAACTC

  

Lymphotoxin

F:

GCTGCATCCCTAAGAACAGC

141 bp

BC149732

 

R:

CATCCGGCTCAAAAATCAGT

  

TLR4

F:

TGGTAAACCCCAGAGTCCAG

164 bp

NM_174198

 

R:

GCACAATGCTTGGTACATGG

  

NFkB1

F:

GCACCACTTATGACGGGACT

148 bp

NM_001076409

 

R:

TCCTCATCCCAGGAGTCATC

  

NFkB2

F:

ATCTGAGCATTGTGCGACTG

131 bp

NM_001102101

 

R:

CTTCAGGTTTGAGGCTCCAG

  

GRα

F:

CCATTTCTGTTCACGGTGTG

132 bp

AY238475

 

R:

CTGAACCGACAGGAATTGGT

  

Fas

F:

AGTTGGGGAGATGAATGCTG

171 bp

NM_174662

 

R:

CCTGTGGATAGGCATGTGTG

  

Haptoglobin

F:

TGGTCTCCCAGCATAACCTC

185 bp

BC109668

 

R:

AGGGTGGAGAACCACCTTCT

  

CD62L

F:

CCGATTGCTGGACTTACCAT

194 bp

NM_174182

 

R:

CCAAGTCCACACCCCTTCTA

  

p21

F:

TCCAAGGACTTTTTCCATTTGC

75 bp

[25]

 

R:

TCTGACTCCTTCAGCTGTTATTCAA

  

BPI

F:

TTCAGAAATGATCCAAACATGAAAC

81 bp

[25]

 

R:

GCCCTTGGAAGAAACAATTCC

  

ACTB

F:

ACTTGCGCAGAAAACGAGAT

123 bp

BT030480

 

R:

CACCTTCACCGTTCCAGTTT

  

SDHA

F:

AACTGCGACTCAACATGCAG

132 bp

NM_001034034

 

R:

TGTCGAACGTCTTCAGATGC

  

GAPDH

F:

GGGTCATCATCTCTGCACCT

176 bp

DQ402990

 

R:

GGTCATAAGTCCCTCCACGA

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