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Table 1 qRT-PCR Results: Goodness of fit as measured by the percent of the variation (R2) in threshold cycles (Ct) explained by the ANOVA1 model and Ct least-squares means2 for 10 DE genes across two genotypic lines (Resistant and Susceptible) and three time points (T0, T1, T2).

From: A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep

Gene

R2,%

Least-Squares Means, Ct

  

Resistant

Susceptible

  

T0

T1

T2

T0

T1

T2

ABCC11

43.7

27.7a

29.3b

25.8c

27.1a,c

27.0a,c

26.5a,c

FABP4

88.8

32.6a

32.9a

30.5b

26.8c

26.3c

26.9c

FADS1

50.7

23.6a

23.14a

22.0b

23.9a

24.4a

22.4a,b

HMGCR

57.3

25.4a

27.4a

25.2a

26.6a

31.9b

20.5c

KLK10

47.6

25.8a

28.6b

27.5a

25.9a

28.0a,b

21.3c

KRT5

80.2

24.2a

32.0b

26.6a

21.8c

22.6c

18.1d

LYZ

61.5

33.3a

34.7a

34.6a

30.4b

33.1a,b

24.3c

S100A7

67.1

35.6a,b

35.3b

37.1a

32.1c

31.1c,d

29.3c

SPARC

55.2

18.8a

21.0b

19.7a

20.6a

23.0c

16.8d

ZMYM2

52.0

30.2a,b

32.6a

32.4a

29.3b

33.8c

23.7d

  1. 1We fitted an overall ANOVA model to obtain the least-square means of each gene and ten gene-specific ANOVA models to compute the R2. See Materials and Methods for details.
  2. 2Within a row, least-square means with different superscripts are statistically different at P < 0.05 significance level.