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Table 2 Haplotypes and their respective frequencies for B. indicus, B. taurus, and composite cattle

From: Frequencies of polymorphisms associated with BSE resistance differ significantly between Bos taurus, Bos indicus, and composite cattle

 

23-bp

12-bp

69

75

108

126

# rep

234

339

461

555

576

630

675

678

B. indicus

Composite

B. taurus

1

-

-

C

G

T

A

6

A

C

G

C

C

C

C

T

----

0.04

0.06

2

-

-

C

G

T

A

6

G

T

G

C

C

C

C

T

0.01

0.17

0.02

3

-

-

C

G

T

A

6

G

C

G

C

C

C

C

T

0.12

0.21

0.40

4

-

-

C

G

T

A

6

G

C

G

C

T

C

C

T

----

0.04

0.04

5

-

+

C

G

T

A

5

--

C

G

C

C

C

C

T

----

0.03

0.03

6

-

+

C

G

T

A

5

--

C

G

C

C

C

C

C

0.02

0.01

----

7

-

+

C

G

T

A

6

A

C

G

T

C

C

C

T

0.10

----

----

8

-

+

C

G

T

A

6

A

C

G

T

C

T

C

T

0.14

0.05

----

9

-

+

C

G

T

A

6

G

C

G

C

C

C

C

T

0.30

0.12

0.01

10

-

+

T

G

T

A

6

G

C

G

C

C

C

C

T

0.17

0.03

<0.01

11

+

+

C

G

T

A

6

A

C

G

C

C

C

C

T

0.05

0.13

0.38

12

+

+

C

G

T

A

6

G

T

G

C

C

C

C

T

----

0.03

0.01

13

+

+

C

G

T

A

6

G

C

G

C

C

C

C

T

----

0.03

0.02

14

+

+

C

G

A

G

6

A

C

A

C

C

C

T

C

0.03

----

----

15

+

+

C

A

A

G

6

G

C

A

C

C

C

C

C

0.03

0.01

----

16

+

+

T

G

T

A

6

G

C

G

C

C

C

C

T

----

0.03

<0.01

  1. Haplotype positions are the 23-bp and 12-bp insertions (+) or deletions (-), nucleotide position in the PRNP coding sequence, and the number of octapeptide repeats (#rep). Frequencies of each haplotype in B. indicus, B. taurus, and composite cattle are listed.
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BMC Veterinary Research

ISSN: 1746-6148

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