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Table 2 SNPs found in the investigated fragments of porcine desmoglein 1

From: Investigation of SNPs in the porcine desmoglein 1 gene

SNP number

Nucleotide number *1

Base 1

Base 2

Codon 1

Amino acid 1

Codon 2

Amino acid 2

Similarity *2

1

823

T

C

TCT

S (Ser)

CCT

P (Pro)

74

2

828

A

G

TCA

S (Ser)

TCG

S (Ser)

0

3

829

A

G

     

4

830

A

T

AAT

N (Asn)

GTA

V (Val)

133

5

831

A

T

     

6

838

A

C

AAA

K (Lys)

CAA

Q (Gln)

53

7

1139

C

T

TTA

L (Leu)

TCA

S (Ser)

145

  1. *1 Numbering based on full cDNA sequence GenBank: AY677210
  2. *2 Degree of similarity between two amino acids based on physiochemical differences given according to Grantham [9]