Skip to main content

Table 2 US8 nucleotide and amino acid sequence similarities between the Anlier isolate and ruminant alphaherpesviruses

From: Isolation and characterisation of a ruminant alphaherpesvirus closely related to bovine herpesvirus 1 in a free-ranging red deer

 

Nucleotide similarity

 

US8

BoHV-1 Lam (1.1)

BoHV-1 K22 (1.2)

BoHV-5 N569

BuHV-1 b6

CpHV-1 Ba-1

CvHV-1 Banf. 82

CvHV-2 Salla 82

ElkHV-1

CvHV-1 Anlier

SuHV-1 Becker

Amino acid similarity

BoHV-1 Lam (1.1)

 

99.4

85.3

86.5

76.2

83.4

76.5

83.7

83.1

50.2

 

BoHV-1 K22 (1.2)

99

 

85

86.6

76.3

83.6

76.5

83.9

83.2

50

 

BoHV-5 N569

76.4

75.9

 

96.5

74.8

87.3

80.6

88.3

87

53.9

 

BuHV-1 b6

78.8

79.8

92.7

 

76.8

89

80.9

90

88.8

54

 

CpHV-1 Ba-1

59.7

60.1

59.3

61.2

 

77.8

76.3

78.6

77.8

50.2

 

CvHV-1 Banf. 82

69.8

70.8

76.4

79.8

60.2

 

82.6

97.5

97.3

53.2

 

CvHV-2 Salla 82

64.5

65

67.3

69.8

60.2

70.3

 

82.7

82.4

52.9

 

ElkHV-1

69.8

70.8

77.8

81.2

61.2

94.2

70.8

 

96.2

53.9

 

CvHV-1 Anlier

70.3

71.2

76.4

80.2

57.8

95.1

69.8

92.3

 

52.4

 

SuHV-1 Becker

25

25

30.4

30.7

25.8

28.7

25.3

29.1

27.2

 
  1. Suid herpesvirus 1 (SuHV-1) Becker strain was used as an outgroup.