Table 2 SNPs identified in AKR1C genes genotyped in 1/4 Meishan F8 and F10 population.
| Â | Â | Â | Â | Â | Allele frequencies3 | Â | ||
|---|---|---|---|---|---|---|---|---|
Assay | Gene | Accession1 | Location2 | Polymorphism | F8 & F10 | MS | WC | Polymorphic site4 |
33391_261 C/T | AKR1CL2 | BV102614 | Intron 1 | Â | T = 0.63 | T = 0.21 | T = 0.81 | ccctgcacagYagcgcgggca |
49422_42 A/T | AKR1C2 | BV680531 | nt 179 | Ile16Phe | A = 0.77 | A = 0.50 | A = 1.00 | cggtcacctcWttcctgtact |
36962_196 A/T | AKR1C2 | DQ474066 | nt 779 | Tyr216Asn | A = 0.62 | A = 0.17 | A = 0.89 | tttggttgccWatgctgccct |
36962_681 A/G | AKR1C2 | DQ474066 | nt 833 | Val234 Ile | G = 0.85 | ND | ND | aaaccacccaRttctcttgg |
31063_1495 G/T | AKR1C4 | BV680526 | promoter | ERE site | T = 0.55 | T = 0.10 | T = 0.94 | tcagagtactKaccttgacca |
31503_2415 A/G | AKR1C4 | BV680525 | Exon 1 | silent | G = 0.81 | G = 1.00 | G = 0.67 | tgagtagtggRgaagagacgt |
27648_208 C/T | AKR1C4 | BV680527 | Exon 1 | silent | T = 0.67 | T = 0.36 | T = 0.86 | agctgaatgaYgggcacctca |
20502_681 C/T | AKR1C4 | BV680537 | Intron 2 | Â | C = 0.57 | C = 0.17 | C = 0.92 | cttttagctaYtgatgtttmc |
20502_722 C/T | AKR1C4 | BV680537 | Intron 2 | Â | C = 0.78 | C = 0.50 | C = 1.00 | aaatcayaagYcatttttaat |
14984_99 G/T | AKR1C4 | BV680523 | Intron 4 | Â | T = 0.56 | ND | ND | aaatgtgggtKtgatccctgg |
36969_772 C/T | AKR1C4 | BV680543 | Exon 7 | silent | C = 0.56 | C = 0.25 | C = 0.94 | agaaacacaaYagaagcccag |
49431_198 C/T | AKR1C4 | BV680533 | Intron 8 | Splice site | T = 0.58 | T = 0.50 | T = 0.81 | ttcccttcctYycaggtttttr |