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Table 2 Comparative sequence statistics

From: Molecular characterization and exclusion of porcine GUSBas a candidate gene for congenital hernia inguinalis/scrotalis

  Human Pig Mouse
Cytogenetic localization HSA7q11.21 SSC3p14-p16 MMU5G1.3
Sequence considered (bp) 25000 17121 16449
Length of gene within sequence considered (bp) 21287 14436 14148
GC content (%) 51.8 54.7 48.9
CpG islands
(position within sequence considered; length (bp))
3730 – 4379; 650
11454 – 11729; 276
1510 – 2653;1144
6690 – 6910; 221
15462 – 15724; 263
2239 – 2565; 327
7084 – 7453; 370
11780 – 11982; 203
15134 – 15358; 252
15660 – 15863; 204
Repetitive sequence total (%) 57.6 20.2 34.2
SINE (%) 51.7 14.7 31.9
   Alu/B1 (%) 50.6 -- 9.3
   B2-B4 (%) -- -- 22.1
   MIR (%) 1.1 0 0
   IDs (%) -- -- 0.5
LINE (%) 0.5 4.5 0
LTR (%) 4.9 0 0
Others (%) 0.5 1.0 2.3