Table 2 Comparative sequence statistics
Human | Pig | Mouse | |
|---|---|---|---|
Cytogenetic localization | HSA7q11.21 | SSC3p14-p16 | MMU5G1.3 |
Sequence considered (bp) | 25000 | 17121 | 16449 |
Length of gene within sequence considered (bp) | 21287 | 14436 | 14148 |
GC content (%) | 51.8 | 54.7 | 48.9 |
CpG islands (position within sequence considered; length (bp)) | 3730 – 4379; 650 11454 – 11729; 276 | 1510 – 2653;1144 6690 – 6910; 221 15462 – 15724; 263 | 2239 – 2565; 327 7084 – 7453; 370 11780 – 11982; 203 15134 – 15358; 252 15660 – 15863; 204 |
Repetitive sequence total (%) | 57.6 | 20.2 | 34.2 |
SINE (%) | 51.7 | 14.7 | 31.9 |
Alu/B1 (%) | 50.6 | -- | 9.3 |
B2-B4 (%) | -- | -- | 22.1 |
MIR (%) | 1.1 | 0 | 0 |
IDs (%) | -- | -- | 0.5 |
LINE (%) | 0.5 | 4.5 | 0 |
LTR (%) | 4.9 | 0 | 0 |
Others (%) | 0.5 | 1.0 | 2.3 |