Table 1 List of the oligonucleotide probes used in this study*
Target bacteria | Name of the probe | Target sequence (5’-3’) | Target region of rRNA | References |
|---|---|---|---|---|
Domain bacteria | S-D-Eub-0338 | 5’-GCTGCCTCCCGTAGGAGT-3’ | 16S | [10] |
Escherichia coli | S-S-E.coli-1161 | 5’-GCATAAGCGTCGCTGCCG-3’ | 23S | [11] |
Enterococcus spp. | S-G-Enteroco-184 | 5’-CAAATCAAAACCATGCGG-3’ | 16S | [12] |
Clostridium perfringens | S-S-C.perfring-1 | 5’-TGGTTGAATGATGATGCC-3’ | 16S | [13] |
Clostridium difficile | S-S-C.diff-193 | 5’-TGTACTGGCTCACCTTTG-3’ | 16S | [14] |