Table 3 The recombinant PDCoV strains and the recombination regions
Strain name | Major parent | Minor parent | Breakpoints | References |
|---|---|---|---|---|
CHN-GX01-2018 | CHN-HB-2014 | Vietnam/Binh21/2015 | Nsp2 (124)-Nsp3 (3447); Nsp12 (12,843)-Nsp13 (14,847) | Huang et al. Vet Med Sci. 2020 |
CHN-GX09-2018 | ||||
CHN-GX11-2018 | ||||
CHN-GX12-2018 | ||||
CHN-GX81-2018 | Vietnam/Binh21/2015 | CHN-HB-2014 | Nsp2 (3465)-Nsp12 (12,843); Nsp13 (15,406)-Nsp15 (17,631) | |
CHN-HG-2017 | CH/SXD1/2015 | Vietnam/HaNoi6/2015 | Nsp3 (3153–4249) | Zhang et al. Arch Virol. 2018 |
CHN-SC2015 | SHJS/SL/2016 | TT-1115 | Nsp3 (6020)-Nsp4 (7069) | Zhao et al. Viruses. 2019 |
CHN/CQ/BN23/2016 | CHN-AH-2004 | Thailand/S5015L/2015 | 5′ UTR (471)-Nsp2 (1442) | Wang et al. Arch Virol. 2022 |
P29_15_VN_1215 | P12_14_VN_0814 | USA/Minnesota159/2014 | S (19,454)-M (23,512) | Saeng-chuto et al. Transbound Emerg Dis. 2020 |
P30_15_VN_1215 | ||||
P1_16_VN_0116 | ||||
Binh21 | S5011 | HKU15-44 | Nsp2 (1007)-NS6 (23,846) | Le et al. Arch Virol. 2018 |
HaNoi6 | S5011 | HKU15-44 | ||
CHN-GD16-03 | CHN-JS-2014 | P1_16_BTL_0115 | S (19,251)-M (23,074) | Mai et al. Genome Announcements 2017 |
CH-HA2–2017 | CH-HA3–2017 | HKU15–155 | S (27-1234) | Zhang et al. Infect Genet Evol. 2019 |
CHN-HeN06-2022 | CHN-HB-2014 | PDCoV/NKP-1/2016 /Thailand | Nsp2 (1009)-Nsp3 (2449) | This study |