Table 1 Nucleotide and amino acid sequence similarity analysis between CHN-HeN06-2022 and the reference strains
CHN-HeN06-2022 (OP501870) | Similarity (nt/aa) | ||||
|---|---|---|---|---|---|
CHN-AH-2004/China/2004 (KP757890) | HKU15-44/China/2009 (JQ065042) | CHN-HB-2014/China/2014 (KP757891) | OH11846/USA/2014 (KT381613) | S5011/Thailand/2015 (KU051641) | |
Genome | 98.3/– | 98.4/– | 98.7/– | 98.5/– | 97.5/– |
5′ UTR | 99.4/– | 99.4/– | 99.4/– | 99.3/– | 99.3/– |
ORF1a | 98.2/98.9 | 98.1/98.8 | 98.6/99.2 | 98.3/99.1 | 97.6/98.3 |
ORF1b | 98.8/99.7 | 98.6/99.7 | 99.1/99.8 | 99.0/99.7 | 97.8/99.4 |
S | 97.4/97.8 | 97.9/98.0 | 97.9/98.1 | 97.8/98.3 | 95.9/96.8 |
E | 99.2/100.0 | 100.0/100.0 | 100.0/100.0 | 99.6/100.0 | 100.0/100.0 |
M | 98.9/98.6 | 98.8/98.6 | 98.8/98.6 | 98.6/98.6 | 98.3/98.6 |
N | 98.1/98.8 | 98.8/99.7 | 98.7/99.7 | 98.8/99.7 | 97.3/98.8 |
NS6 | 98.9/98.9 | 99.3/99.3 | 99.3/99.3 | 98.9/98.9 | 98.2/98.2 |
NS7 | 98.8/97.5 | 99.3/98.5 | 99.2/98.0 | 99.2/98.0 | 97.7/94.5 |
3′ UTR | 98.4/– | 98.4/– | 98.4/– | 98.4/– | 97.4/– |