Gene target | Sequence (5′-3′) | Melting temp. (°C) | Amplicon length (bp) |
---|---|---|---|
16S rDNA | F: ACT AAC GCT GGC GGC GCG R: TAC CCA CGC TTT CGT GCC | 56 | 1500 |
secY (1) | F: GCG ATT CAG TTT AAT CCT G R: GCG ATT CAG TTT AAT CCT GC | 58 | 245 |
ORF22 | F: ATT ATT GAG ACA GAG ATA R: AAG CGG AAC GGG ACG AAT | 56 | 561 |
ORF36 | F: AGT CGG GGT TCG ATA CTG R: GGT CAG TCC TGT AAC TGC | 54 | 489 |
IS1500a | F: TAC GGA GCA AGA ACG GTT R: AGA TCC GAT TCT TAT GAT TC | 56 | 143 |
IS1533a | F: TTG TAA TCC CTG TGT TGT TT R: TTA AAT AGT CCA CTC CTC G | 56 | 130 |
secY (2)a | F: CTG AAT CGC TGT ATA AAA GT R: GAA GGC TGG TAA ACA AAA G | 58 | 130 |