Experiment 1 | Experiment 2 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Day | 0 | 0 | 2 | 2 | 0 | 2 | 2 | 14 | 14 | 16 | 16 |
phyllum | Str | Tet | Str | Tet | Str/Tet | Str | Tet | Str | Tet | Str | Tet |
Bacteria. other | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.01 | ND | 0.09 | 0.46 | ND | ND |
Actinobacteria | 7.21 | 4.09 | 0.38 | 0.09 | 1.67 | 8.7 | 0.01 | 0.35 | 1.76 | 0.24 | 0.11 |
Bacteroidetes | 13.04 | 3.56 | 0.07 | 0.02 | 6.61 | 0.57 | ND | 2.48 | 11.3 | 0.04 | ND |
Cyanobacteria | 0.01 | ND | 0.02 | 0.01 | ND | ND | ND | ND | ND | ND | ND |
Deferribacteres | ND | ND | ND | ND | 0.02 | ND | ND | ND | 0.23 | ND | ND |
Firmicutes | 61.83 | 86.60 | 45.07 | 27.81 | 89.88 | 90.3 | 99.88 | 89.84 | 82.94 | 99.22 | 99.8 |
Fusobacteria | ND | ND | ND | ND | 0.77 | 0.12 | ND | 6.81 | 0.24 | 0.4 | ND |
Chloroflexi | ND | ND | 0.003 | ND | ND | ND | ND | ND | ND | ND | ND |
Lentisphaerae | ND | ND | ND | ND | 0.003 | ND | ND | ND | ND | ND | ND |
Proteobacteria | 17.80 | 5.33 | 54.41 | 72.04 | 0.9 | 0.16 | 0.08 | 0.28 | 2.2 | 0.03 | 0.04 |
Spirochaetes | ND | ND | ND | ND | 0.001 | ND | ND | ND | ND | ND | ND |
Synergistetes | ND | ND | ND | ND | 0.1 | 0.07 | ND | 0.11 | 0.82 | ND | ND |
Tenericutes | ND | ND | ND | ND | 0.001 | ND | ND | ND | ND | ND | ND |
TM7 | 0.09 | 0.39 | 0.01 | ND | 0.01 | 0.02 | ND | 0.01 | ND | 0.01 | ND |
OTU* | 590 | 709 | 172 | 273 | 2222 | 433 | 182 | 896 | 1028 | 236 | 228 |
Chao1 | 1106 | 932 | 488 | 263 | 4592 | 709 | 263 | 1675 | 1860 | 490 | 364 |
OTU 14,446 | 478 | 528 | 131 | 182 | 869 | 433 | 164 | 541 | 799 | 211 | 165 |
Chao1 14,446 | 769 | 887 | 209 | 240 | 1791 | 709 | 290 | 1043 | 1510 | 422 | 357 |
Evenness | 0.615 | 0.57 | 0.3 | 0.24 | 0.37 | 0.47 | 0.2 | 0.39 | 0.45 | 0.22 | 0.28 |
Shannon index | 4.03 | 3.68 | 1.71 | 1.26 | 2.87 | 2.85 | 1.03 | 2.65 | 3.12 | 1.25 | 1.53 |
Total n. of reads | 22,885 | 29,269 | 32,010 | 25,031 | 76,785 | 14,446 | 19,834 | 37,707 | 22,615 | 17,808 | 27,703 |