Serogroups and virulence genes | Distribution of serogroup and virulence gene within CCs, no. (%) | ||||
---|---|---|---|---|---|
CC10 (n = 26) | CC58 (n = 8) | CC1687 (n = 19) | CC88 (n = 6) | ||
Serogroupb | O11 | 3/(11.1) | 0/(0) | 14/(73.7)c | 0/(0) |
O8 | 6/(22.2) | 3/(37.5) | 0/(0) | 3/(15.3) | |
O161 | 1/(3.7) | 0/(0) | 1/(5.3) | 1/(5.3) | |
O138 | 0/(0) | 2/(25.0) | 0/(0) | 1/(5.3) | |
Virulence genea | O101 | 5/(18.5) | 0/(0) | 0/(0) | 0/(0) |
papA | 23/(88.5) | 5/(62.5) | 14/(73.7) | 3/(50.0) | |
papC | 10/(38.5) | 3/(37.5) | 6/(31.6) | 4/(66.7) | |
sfa | 20/(76.9) | 7/(87.5) | 5/(26.3)c | 2/(33.3) | |
Afa/draBC | 9/(34.6) | 2/(25.0) | 2/(10.5) | 1/(16.7) | |
kpsMTII | 21/(80.8) | 6/(75.0) | 18/(94.7) | 4/(66.7) | |
iutA | 21/(80.8) | 6/(37.5) | 16/(84.2) | 4/(66.7) | |
papEF | 2/(7.7) | 0/(0) | 1/(5.3) | 2/(33.3) | |
papG allele I | 1/(3.8) | 0/(0) | 1/(5.3) | 0/(0) | |
papG allele II | 0/(0) | 0/(0) | 0/(0) | 2/(33.3) | |
papG allele III | 0/(0) | 0/(0) | 0/(0) | 0/(0) | |
papG allele II/III | 0/(0) | 0/(0) | 0/(0) | 2/(33.3) | |
sfaS | 3/(11.5) | 0/(0) | 1/(5.3) | 2/(33.3) | |
focG | 1/(3.8) | 1/(12.5) | 1/(5.3) | 0/(0) | |
bmaE | 1/(3.8) | 0/(0) | 5/(26.3) | 0/(0) | |
gafD | 3/(11.5) | 0/(0) | 0/(0) | 1/(16.7) | |
nfaE | 5/(18.5) | 2/(25.0) | 4/(21.1) | 0/(0) | |
iha | 1/(3.8) | 0/(0) | 1/(5.3) | 1/(16.7) | |
fimH | 23/(85.2) | 8/(100) | 19/(100) | 6/(100) | |
cdtB | 0/(0) | 0/(0) | 1/(5.3) | 0/(0) | |
cvaC | 17/(63.0) | 6/(75.0) | 19/(100) | 6/(100) | |
hlyA | 2/(7.6) | 0/(0) | 4/(21.1) | 1/(16.7) | |
CNF1 | 5/(18.5) | 4/(50.0) | 1/(5.3) | 0/(0) | |
kpsMT III | 2/(7.6) | 0/(0) | 1/(5.3) | 0/(0) | |
kpsMT K1 | 5/(18.5) | 1/(12.5) | 16/(84.2)c | 1/(16.7) | |
kpsMT “K5” | 7/(26.9) | 2/(25.0) | 16/(84.2) | 2/(33.3) | |
fyuA | 12/(44.4) | 5/(62.5) | 12/(63.2) | 4/(66.7) | |
ireA | 19/(70.4) | 7/(87.5) | 12/(63.2) | 5/(83.3) | |
Irp2 | 13/(50.0) | 7/(87.5) | 12/(63.2) | 6/(100) | |
iron | 16/(59.3) | 6/(75.0) | 17/(89.5) | 6/(100) | |
ibeA | 15/(55.6) | 6/(75.0) | 1/(5.2)c | 5/(83.3) | |
ompT | 4/(15.4) | 6/(75.0)c | 2/(10.5) | 3/(50) | |
traT | 25/(96.1) | 8/(100) | 18/(94.7) | 6/(100) | |
iss | 10/(38.4) c | 7/(87.75) | 16/(84.2) | 6/(100) | |
tsh | 3/(11.5) | 0/(0) | 0/(0) | 3/(50) | |
PAI | 2/(7.6) | 0/(0) | 1/(5.3) | 1/(16.7) |