Table 4 Significantly down-regulated genes in mammary tissue challenged with S. aureus.

IL1A

M37210

Bovine interleukin 1-alpha (IL-1-alpha) mRNA, complete cds.

NGFB

NM_002506

Homo sapiens nerve growth factor, beta polypeptide (NGFB), mRNA

IL13

AF072807

Bos taurus interleukin-13 precursor (IL-13) mRNA, partial cds

RETN

NM_183362

Bos taurus resistin (RETN), mRNA

SFRP1

NM_003012

Homo sapiens secreted frizzled-related protein 1 (SFRP1), mRNA

SPP1

AF492837

Homo sapiens secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) (SPP1), mRNA

CD24

NM_013230

Homo sapiens CD24 antigen (small cell lung carcinoma cluster 4 antigen) (CD24),

EPB41L1

NM_174528

Homo sapiens erythrocyte membrane protein band 4.1-like 1 (EPB41L1), transcript

FLNA

NM_001456

Homo sapiens filamin A, alpha (actin binding protein 280) (FLNA), mRNA

ITGA3

NM_002204

Homo sapiens integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor

ITGB4

NM_000213

Homo sapiens v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog

KRT5

BC006780

Homo sapiens keratin 5 (epidermolysis bullosa simplex, Dowling-Meara/Kobner/Weber

PFN2

NM_053024

Homo sapiens profilin 2 (PFN2), transcript variant 1, mRNA

VCAM1

NM_174484

Homo sapiens vascular cell adhesion molecule 1 (VCAM1), transcript variant 2, mRNA

VCL

NM_014000

Homo sapiens vinculin (VCL), transcript variant meta-VCL, mRNA

VIM

NM_003380

Homo sapiens vimentin (VIM), mRNA

CX3CR1

NM_001337

Homo sapiens chemokine (C-X3-C motif) receptor 1 (CX3CR1), mRNA

ERBB4

NM_005235

Homo sapiens v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)

FGFR1

NM_023106

Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2)

KIT

NM_000222

Homo sapiens v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog (KIT)

MET

V00654

Homo sapiens met proto-oncogene (hepatocyte growth factor receptor) (MET), mRNA

PDGFRA

NM_006206

Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA)

TGFBR3

NM_003243

Homo sapiens transforming growth factor, beta receptor III (betaglycan, 300 kDa)

PP

M95283

Homo sapiens pyrophosphatase (inorganic) (PP), mRNA

PPM1J

NM_005167

Homo sapiens protein phosphatase 1J (PP2C domain containing) (PPM1J), mRNA

PRKCA

NM_174435

Homo sapiens protein kinase C, alpha (PRKCA), mRNA

RHOB

NM_004040

Homo sapiens ras homolog gene family, member B (RHOB), mRNA

CIDEA

NM_001279

Homo sapiens cell death-inducing DFFA-like effector a (CIDEA), transcript variant

CLU

NM_173902

Bos taurus clusterin (CLU), mRNA.

EPHA1

NM_005232

Homo sapiens EphA1 (EPHA1), mRNA

EPHA7

NM_004440

Homo sapiens EphA7 (EPHA7), mRNA

DDX5

NM_004396

Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (DDX5), mRNA

NFATC4

NM_004554

Homo sapiens nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent

TEBP

NM_006601

Homo sapiens inactive progesterone receptor, 23 kD (TEBP), mRNA

CAMP

NM_174825

Homo sapiens cathelicidin antimicrobial peptide (CAMP), mRNA

CSN1S1

NM_181029

Homo sapiens casein alpha s1 (CSN1S1), mRNA

FLJ20920

NM_025149

Homo sapiens hypothetical protein FLJ20920 (FLJ20920), mRNA

GATM

NM_001482

Homo sapiens glycine amidinotransferase (L-arginine:glycine amidinotransferase

GPX4

NM_002085

Homo sapiens glutathione peroxidase 4 (phospholipid hydroperoxidase) (GPX4)

LOC529035

AF109167

Bos taurus immunoglobulin IgA heavy chain constant region gene, partial cds

18S rRNA

AY150548

Cervus nippon 18S ribosomal RNA gene, partial sequence

SNX19

AC150499

Homo sapiens similar to Sorting nexin 19 (LOC399979), mRNA